課程資訊
課程名稱
生物系統模擬
Biological Modeling 
開課學期
109-2 
授課對象
理學院  海洋生物及漁業組  
授課教師
謝志豪 
課號
OCEAN5074 
課程識別碼
241EU3040 
班次
 
學分
3.0 
全/半年
半年 
必/選修
選修 
上課時間
星期五2,3,4(9:10~12:10) 
上課地點
 
備註
本課程以英語授課。上課地點:計中110教室。 與沈聖峰合授
總人數上限:30人 
Ceiba 課程網頁
http://ceiba.ntu.edu.tw/1092BioModel 
課程簡介影片
 
核心能力關聯
本課程尚未建立核心能力關連
課程大綱
為確保您我的權利,請尊重智慧財產權及不得非法影印
課程概述

The course material is designed to be interdisciplinary, integrating biology, ecology, mathematics and environmental sciences. While the main course material is based on classic ecological modeling textbooks and articles, these analytic methods are applicable to multi-faceted research questions. The material builds from a single population and then extends to the ecosystem level, including species interaction, climate changes and disease as well as molecules interactions within cells. Regular modeling exercises are required (1 unit as practice). After equipped with modeling skills, students have to develop their own research questions and use modeling and data mining approaches to solve their questions. Instructors will guide students through the question-solving processes. 

課程目標
The goal of this course is to introduce mathematical and statistical approaches to study biological systems as well the interactions of abiotic and biotic components. This is a course for students with basic knowledge of statistics, calculus, and ecology. This is a sequential course of Mathematics for Life Scientists (or equivalent). We will introduce various model types, building blocks of models, and the ways to construct models. We will teach computer languages to simulate and analyze these models as well as data. The course has a hands-on work component. Students will carry out modeling and data analysis exercises on a regular basis. Finally, students will develop their own model and applications. 
課程要求
Students will carry out modeling and data analysis exercises on a regular basis. Students need to make presentations of their homework. We will also teach the presentation skills. Finally, students will develop their own models and applications. For the final project, students need to first prepare and discuss their proposals with the instructors. Through the discussing processes students will develop constructive and logical thinking. 
預期每週課後學習時數
 
Office Hours
另約時間 
指定閱讀
 
參考書目
A Primer of Ecology (4th edition) Nicholas J. Gotelli 
評量方式
(僅供參考)
   
課程進度
週次
日期
單元主題
Week 1
2/26  Introduction to programming and modeling (Sheng-Feng and Po-Ju)
https://youtu.be/70rz-TjzNp8 
Week 2
3/05  Review of ODE analysis and modeling: species interactions (Zac)
https://youtu.be/8uBHoZNqFgk 
Week 3
3/12  Alternative stable state and On and off of cell cycle (Zac)
https://youtu.be/-zy4-jABbLY 
Week 4
3/19  Phenomenological and mechanistic models of species competition (Po-Ju)
https://youtu.be/ZhU5wAaVpVA 
Week 5
3/26  Modeling high dimension systems (Po-Ju)
https://youtu.be/TJie2Mz3OWI 
Week 6
4/02  Holiday 
Week 7
4/09  Discrete models and age-structured models (Po-Ju)
https://youtu.be/w1fQiRtn-ws 
Week 8
4/16  Individual-based models (Po-Ju) (1-page proposal due)
https://youtu.be/kWn02rFyP3M 
Week 9
4/23  Introduction to evolutionary model and optimization (Sheng-Feng)
https://youtu.be/pk64809tnl4 
Week 10
4/30  Self-consistent model in evolution (Sheng-Feng)
https://youtu.be/7frO30lglHg 
Week 11
5/07  Dynamic programming (Sheng-Feng)
https://youtu.be/qs3guHSiJ0s 
Week 12
5/14  Evolutionary game theory (Sheng-Feng)
https://youtu.be/cCVgiF0fMkI 
Week 13
5/21  Adaptation to the fluctuating environment (Sheng-Feng)
https://youtu.be/7uSqfO1CN8s 
Week 14
5/28  Modeling climate change (Zac)
https://youtu.be/xSC5Pyaipos 
Week 15
6/04  Group project discussion 
Week 16
6/11  Analyzing ecological chaos (Zac)
https://youtu.be/G1yxDo0bnvg 
Week 17
6/18  Project presentations
https://youtu.be/WlpCMLmA8Ps 
Week 18
6/25  Project presentations
https://youtu.be/Xk3AuAmkj90